AUTOBOT STARSHIPS
Alchemor
Ark I
Nova Prime (captain), Cyclonus, Galvatron, Grindcore, Jhiaxus, Scourge, Tailpipe
Ark II
Optimus Prime (captain), Arcee, Blaster, Bluestreak, Brawn, Bulkhead, Bumblebee, Cliffjumper, Gears, Hot Rod, Hound, Huffer, Ironhide, Jazz, Mirage, Perceptor, Prowl, Ratchet, Seaspray, Side Burn, Sideswipe, Spiral, Sunstreaker, Trailbreaker, Wheeljack, Windcharger
Axalon
Primal Major (captain), Airazor, Cheetor, Rattrap, Rhinox
Azusa
Quickswitch (captain), Ariel, Plummet
Battlestar
Sky Garry
Calabi-Yau
Astroscope, Comettor, Halftrack
Darkstar
Silverbolt (captain), Air Raid, Fireflight, Quakebreak, Skydive, Slingshot
Eight Track
Enforcer
Ultra Magnus
Fateful Archetype
Domino, Rung, Scanner
Gung Ho
Big Convoy (captain), Uplinq
Hope On Wings
Quickswitch (captain)
Hyperion
Quickswitch (captain)
Longbow
Hydra (captain), Kaput, Rung, Vampire
Lost Light / U-1
Nominus II
Quickswitch (captain)
Sojourner's Passage
Azimuth (captain), Glyph, Jolt, Livewire, Perceptor, Swerve
Steelhaven
Under Ultra Magnus: Ultra Magnus (captain), Cosmos, Jazz, Kup, Warpath, Wing Saber
Under Optimus Prime: Optimus Prime (captain), Arcee, Blaster, Bumblebee, Jetfire, Kup, Prowl, Sideswipe
Valiant
Vis Vitalis
Thunderclash (captain), Acceleron, Exocet, Firestar, Javelin, Paddox, Photon, Proxima, Roadmaster, Rocket, Skimmer, Skystriker, Velocity
Voyager
Elita-One (captain), Brainstorm, Chromedome, Glyph, Nightbeat, Rewind, Strongarm, Swerve, Tailgate, Windblade
Xantium
Under Impactor: Impactor (captain), Broadside, Fastfix, Leadfoot, Rack'n'Ruin, Roadbuster, Sandstorm, Springer, Topspin, Twin Twist, Whirl
Under Springer: Springer (captain), Broadside, Fastfix, Guzzle, Ironfist, Kup, Leadfoot, Pyro, Roadbuster, Rotorstorm, Sandstorm, Scattorshot, Scoop, Topspin, Twin Twist, Whirl
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Commanders
Quickswitch, Elita-One, Rodimus
Crew
Under Quickswitch: Nautica, Ore, Riptide, Shock
Under Elita: Ambulon, Atomizer, Brainstorm, Chromedome, Crosscut, Getaway, Glyph, Grapple, Hubcap, Nautica, Nightbeat, Ore, Red Alert, Rewind, Riptide, Rung, Shock, Skids, Star Saber, Strongarm, Swerve, Tailgate, Trailbreaker, Ultra Magnus, Windblade
Under Rodimus: Ambulon, Ammo, Animus, Aquafend, Archforce, Atomizer, Blades, Blaster, Blitzwing, Bluestreak, Boss, Brainstorm, Brawn, Cannonspring, Chromedome, Clutch, Convoy, Cosmos, Crossblades, Crosscut, Crosshairs, Cyclonus, Deftwing, Dipstick, Doomshot, Drift, Evac, First Aid, Fizzle, Gears, Getaway, Glyph, Grapple, Highbrow, Hoist, Hound, Huffer, Inferno, Jackpot, Landmine, Mainframe, Megatron, Nautica, Nightbeat, Octane, Perceptor, Pincher, Pipes, Pointblank, Powerglide, Que, Rad, Ratchet, Red Alert, Rewind, Rollout, Rung, Siren, Skids, Slapdash, Smokescreen, Sprocket, Steeljaw, Stormshot, Strafe, Sunstreaker, Sureshot, Swerve, Tailgate, Trailbreaker, Ultra Magnus, Waverider, Whirl, Windblade, Xaaron
DECEPTICON STARSHIPS
Darksyde
Under Cryotek: Cryotek (captain), Backslash, Buzzbomb, Dinobot, Gnashteeth, Scorponaut, Terrorsaur, Waspinator
Under Gnashteeth: Gnashteeth/Megatron (captain), Blackarachnia, Dinobot, Scorponaut, Tarantulas, Terrorsaur, Waspinator
Harbinger
Payload (captain), Crankcase
Kalis' Lament
Under Heretech: Heretech (captain), Headshot, Krok, Landfall, Oil Slick, Radar, Skullcruncher, Spacewarp, Strika
Under Strika: Strika (captain), Oil Slick
Nemesis
Megatron (captain), Barricade, Blackout, Blitzwing, Brawl, Knock Out, Lugnut, Runabout, Runamuck, Skywarp, Soundwave, Starscream, Thundercracker, Vehicons
Peaceful Tyranny
Tarn (captain), Helex, Kaon, Nickel, Tesarus, Vos
Victory
Shockwave (captain), Slipstream
Weak Anthropic Principle
Krok (captain), Crankcase, Flywheels, Fulcrum, Misfire, Spinister
UNAFFILIATED STARSHIPS
Acheron
Commanders
Scourge
Crew
Cyclonus, Grindcore, Jhiaxus, Sideways, Straxus
Tidal Wave
Commanders
Cannonball II (Stompdown), Cannonball III (Mayday), Cannonball IV (Dreadwheel), Thundertron, Cannonball V (Headshot)
Crew
Under Cannonball II: Mayday
Under Cannonball III: Dreadwheel
Under Cannonball IV: Backslash, Nightclaw, Nightwing, Stronghorn, Thunderlane, Thundertron
Under Thundertron: Axer, Backslash, Headshot, Nightclaw, Nightwing, Stronghorn, Thunderlane
Under Cannonball V: Axer, Backslash, Brimstone, Cruellock, Ferak, Hunter, Nightwing, Thunderlane, Tornado